example.lumi: Example Illumina Expression data in LumiBatch class

Description Usage Format Details References Examples

Description

Example data as a LumiBatch object which is a subset of Barnes data (Barnes, 2005)

Usage

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Format

A 'LumiBatch' object

Details

The data is from (Barnes, 2005). It used Sentrix HumanRef-8 Expression BeadChip. Two samples "100US" and "95US:5P" (each has two technique replicates) were selected. In order to save space, 8000 genes were randomly selected. As a result, the example data includes 8000 genes, each has 4 measurements. The full data set was included in the Bioconductor Experiment data package lumiBarnes.

The entire data set has been built as a lumiBarnes data object and can be downloaded from Bioconductor Experiment Data.

References

Barnes, M., Freudenberg, J., Thompson, S., Aronow, B. and Pavlidis, P. (2005) Ex-perimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms, Nucleic Acids Res, 33, 5914-5923.

The detailed data information can be found at: http://www.bioinformatics.ubc.ca/pavlidis/lab/platformCompare/

Examples

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## load the data
data(example.lumi)

## summary of the data
example.lumi

lumi documentation built on May 2, 2018, 3:34 a.m.

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