example.lumi: Example Illumina Expression data in LumiBatch class

In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Description

Example data as a LumiBatch object which is a subset of Barnes data (Barnes, 2005)

Usage

data(example.lumi)

Format

A 'LumiBatch' object

Details

The data is from (Barnes, 2005). It used Sentrix HumanRef-8 Expression BeadChip. Two samples "100US" and "95US:5P" (each has two technique replicates) were selected. In order to save space, 8000 genes were randomly selected. As a result, the example data includes 8000 genes, each has 4 measurements. The full data set was included in the Bioconductor Experiment data package lumiBarnes.

The entire data set has been built as a lumiBarnes data object and can be downloaded from Bioconductor Experiment Data.

References

Barnes, M., Freudenberg, J., Thompson, S., Aronow, B. and Pavlidis, P. (2005) Ex-perimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms, Nucleic Acids Res, 33, 5914-5923.

The detailed data information can be found at: http://www.bioinformatics.ubc.ca/pavlidis/lab/platformCompare/

Examples

## load the data
data(example.lumi)

## summary of the data
example.lumi

lumi documentation built on Nov. 8, 2020, 5:27 p.m.