addControlData2lumi: Add the control probe data into the controlData slot of...
In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Add the control probe profile data, outputted by BeadStudio, into the controlData slot of LumiBatch object.
Usage
1
addControlData2lumi(controlData, x.lumi)
Arguments
controlData
the control data can be a data.frame or the control probe filename outputted by BeadStudio
x.lumi
a LumiBatch object, to which controlData will be added.
Details
The controlData slot in LumiBatch object is a data.frame with first two columns as "controlType" and "ProbeID". The rest columns are the expression amplitudes for individual samples.
Value
Return the LumiBatch object with controlData slot filled.
Author(s)
Pan Du
See Also
getControlData, plotControlData
Examples
1
2
3
## Not runnable
# controlFile <- 'Control_Probe_Profile.txt'
# x.lumi <- addControlData2lumi(controlFile, x.lumi)
lumi documentation built on Nov. 8, 2020, 5:27 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
Description
Add the control probe profile data, outputted by BeadStudio, into the controlData slot of LumiBatch object.
Usage
1 | addControlData2lumi(controlData, x.lumi)
|
Arguments
controlData |
the control data can be a data.frame or the control probe filename outputted by BeadStudio |
x.lumi |
a LumiBatch object, to which controlData will be added. |
Details
The controlData slot in LumiBatch object is a data.frame with first two columns as "controlType" and "ProbeID". The rest columns are the expression amplitudes for individual samples.
Value
Return the LumiBatch object with controlData slot filled.
Author(s)
Pan Du
See Also
getControlData, plotControlData
Examples
1 2 3 | ## Not runnable
# controlFile <- 'Control_Probe_Profile.txt'
# x.lumi <- addControlData2lumi(controlFile, x.lumi)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.