estimateIntensity: Estimate intensity of Illumina methylation data

In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Description

Estimate intensity of Illumina methylation data, which is the sum of Illumina methylated and unmethylated probe intensities

Usage

estimateIntensity(methyLumiM, returnType=c("ExpressionSet", "matrix"))

Arguments

methyLumiM	MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities
returnType	determine whether return an ExpressionSet or matrix object

Details

The Intensity basically is the sum of Illumina methylated and unmethylated probe intensities.

Value

An ExpressionSet or matrix object of methylation Intensity-value

Author(s)

Pan DU

See Also

See Also as estimateBeta and estimateM

Examples

data(example.lumiMethy)
methyLumiIntensity = estimateIntensity(example.lumiMethy)
boxplot(methyLumiIntensity)

lumi documentation built on Nov. 8, 2020, 5:27 p.m.