estimateIntensity: Estimate intensity of Illumina methylation data

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/methylation_preprocessing.R

Description

Estimate intensity of Illumina methylation data, which is the sum of Illumina methylated and unmethylated probe intensities

Usage

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estimateIntensity(methyLumiM, returnType=c("ExpressionSet", "matrix"))

Arguments

methyLumiM

MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities

returnType

determine whether return an ExpressionSet or matrix object

Details

The Intensity basically is the sum of Illumina methylated and unmethylated probe intensities.

Value

An ExpressionSet or matrix object of methylation Intensity-value

Author(s)

Pan DU

See Also

See Also as estimateBeta and estimateM

Examples

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data(example.lumiMethy)
methyLumiIntensity = estimateIntensity(example.lumiMethy)
boxplot(methyLumiIntensity)

lumi documentation built on May 20, 2017, 9:56 p.m.

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