lumi.package: A package for preprocessing Illumina microarray data

In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Description

lumi R package is designed to preprocess the Illumina microarray (BeadArray) data. It includes functions of Illumina data input, quality control, variance stabilization, normalization and gene annotation.

Details

Package:	lumi
Type:	Package
Version:	1.1.0
Date:	2007-03-23
License:	LGPL version 2 or newer

Author(s)

Pan Du, Simon Lin Maintainer: Pan Du <[e-mail]>

References

1. Du, P., Kibbe, W.A. and Lin, S.M., (2008) 'lumi: a pipeline for processing Illumina microarray', Bioinformatics 24(13):1547-1548

2. Lin, S.M., Du, P., Kibbe, W.A., (2008) 'Model-based Variance-stabilizing Transformation for Illumina Microarray Data', Nucleic Acids Res. 36, e11

3. Du, P., Kibbe, W.A. and Lin, S.M., (2007) 'nuID: A universal naming schema of oligonucleotides for Illumina, Affymetrix, and other microarrays', Biology Direct, 2, 16

lumi documentation built on Nov. 8, 2020, 5:27 p.m.