addControlData2methyLumiM: Add methylation control data to a MethyLumiM object
In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Description
Usage
Arguments
Details
Value
Author(s)
See Also
View source: R/methylation_preprocessing.R
Description
Add methylation control data to a MethyLumiM object
Usage
1
addControlData2methyLumiM(controlData, methyLumiM, checkConsistency = TRUE, ...)
Arguments
controlData
a methylation control data file (output by GenomeStudio), or a MethyLumiQC object
methyLumiM
a MethyLumiM object to add control data
checkConsistency
whether to check the sample names consistency between methyLumiM and controlData
...
other parameters for reading controlData
Details
This function aims to add the controlData (MethyLumiQC object) to the controlData slot of a methyLumiM object
For control data, methylated data matrix in assayData slot corresponds to green channel, and unmethylated data matrix in assayData slot corresponds to red channel.
Value
Return the methyLumiM object with the controlData added
Author(s)
Pan DU
See Also
lumi documentation built on Nov. 8, 2020, 5:27 p.m.
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Description Usage Arguments Details Value Author(s) See Also
View source: R/methylation_preprocessing.R
Description
Add methylation control data to a MethyLumiM object
Usage
1 | addControlData2methyLumiM(controlData, methyLumiM, checkConsistency = TRUE, ...)
|
Arguments
controlData |
a methylation control data file (output by GenomeStudio), or a MethyLumiQC object |
methyLumiM |
a MethyLumiM object to add control data |
checkConsistency |
whether to check the sample names consistency between methyLumiM and controlData |
... |
other parameters for reading controlData |
Details
This function aims to add the controlData (MethyLumiQC object) to the controlData slot of a methyLumiM object For control data, methylated data matrix in assayData slot corresponds to green channel, and unmethylated data matrix in assayData slot corresponds to red channel.
Value
Return the methyLumiM object with the controlData added
Author(s)
Pan DU
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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