example.lumiMethy: Example Illumina Infinium Methylation data in MethyLumiM...

In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Description

An example Illumina Infinium Methylation27k dataset, which includes a control and treatment dataset with both technique and biological replicates

Usage

data(example.lumiMethy)

Details

The example dataset includes four control and four treatment samples together with their technique replicates. The original samples and technique replicates were measured in two batches. Here are the names of sixteen samples: Treat1, Treat2, Treat3, Treat4, Ctrl1, Ctrl2, Ctrl3, Ctrl4, Treat1.rep, Treat2.rep, Treat3.rep, Treat4.rep, Ctrl1.rep, Ctrl2.rep, Ctrl3.rep, Ctrl4.rep.

To save storage space, we randomly subset 5000 CpG sites among about 27000 measured CpG sites.

Examples

data(example.lumiMethy)
sampleNames(example.lumiMethy)

lumi documentation built on Nov. 8, 2020, 5:27 p.m.