boxplotColorBias: Plot the Illumina Infinium methylation color bias in terms of...

In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Description

Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side

Usage

boxplotColorBias(methyLumiM, logMode = TRUE, channel = c("both", "unmethy", "methy", "sum"), grid = TRUE, main = NULL, mar = NULL, verbose = F, subset = NULL, ...)

Arguments

methyLumiM	MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities
logMode	whether plot the intensities in log-scale
channel	estimate the intensity in different methods
grid	whether to add grid on the plot
main	title of the plot
mar	margin of the plot
verbose	whether print verbose information during plot
subset	plot subset of randomly selected rows. All data will be plotted if it is NULL.
...	other parameters of boxplot

Details

Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side

Value

Invisibly return TRUE if plot successfully.

Author(s)

Pan DU

See Also

See Also as boxplot and plotColorBias1D

Examples

data(example.lumiMethy)
boxplotColorBias(example.lumiMethy)

lumi documentation built on Nov. 8, 2020, 5:27 p.m.