Plot the Illumina Infinium methylation color bias in terms of boxplot

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Description

Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side

Usage

1
boxplotColorBias(methyLumiM, logMode = TRUE, channel = c("both", "unmethy", "methy", "sum"), grid = TRUE, main = NULL, mar = NULL, verbose = F, subset = NULL, ...)

Arguments

methyLumiM

MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities

logMode

whether plot the intensities in log-scale

channel

estimate the intensity in different methods

grid

whether to add grid on the plot

main

title of the plot

mar

margin of the plot

verbose

whether print verbose information during plot

subset

plot subset of randomly selected rows. All data will be plotted if it is NULL.

...

other parameters of boxplot

Details

Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side

Value

Invisibly return TRUE if plot successfully.

Author(s)

Pan DU

See Also

See Also as boxplot and plotColorBias1D

Examples

1
2
data(example.lumiMethy)
boxplotColorBias(example.lumiMethy)

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