IlluminaID2nuID: Matching Illumina IDs to nuID based on Illumina ID mapping...

Description Usage Arguments Details Value Author(s) See Also

Description

Matching Illumina IDs to nuID based on Illumina ID mapping libraries.

Usage

1
IlluminaID2nuID(IlluminaID, lib.mapping=NULL, species = c("Human", "Mouse", "Rat", "Unknown"), chipVersion = NULL, ...)

Arguments

IlluminaID

a vector of Illumina IDs

lib.mapping

the ID mapping library. If it is provided, the parameter "species" will be ignored.

species

the species of the chip designed for. If users do not know it, it can be set as "Unknown".

chipVersion

chipVersion information returned by function getChipInfo

...

other parameters of getChipInfo

Details

When the parameter "chipVersion" is not provided, this function basically returned the "idMapping" item returned by function getChipInfo.

Value

The mapping information from Illumina ID to nuID. It will be a matrix with each column corresponding to one matched manifest file when parameter "returnAllMatches" is TRUE. In this case, the columns are sorted from the best match to worst. If IlluminaID is NULL and chipVersion is provided, it will return all mapping information of the chip.

Author(s)

Pan Du

See Also

getChipInfo, nuID2IlluminaID


lumi documentation built on May 31, 2017, 11:53 a.m.

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