smoothQuantileNormalization: Smooth quantile normalization

Description Usage Arguments Value Author(s) See Also

View source: R/methylation_preprocessing.R

Description

Smooth quantile normalization with a reference sample

Usage

1
smoothQuantileNormalization(dataMatrix, ref = NULL, adjData=NULL, logMode = TRUE, bandwidth = NULL, degree = 1, verbose = FALSE, ...)

Arguments

dataMatrix

a matrix of microarray intensity data

ref

a vector of reference sample intensity, which matches the dataMatrix

adjData

data to be adjusted based on the ref and dataMatrix distribution

logMode

whether perform the analysis in log2 scale

bandwidth

a parameter used by locpoly

degree

a parameter used by locpoly

verbose

whether print the processing sample names

...

other parameters used by locpoly

Value

a data matrix with intensity normalized.

Author(s)

Pan DU

See Also

See Also adjColorBias.quantile


lumi documentation built on May 2, 2018, 3:34 a.m.