smoothQuantileNormalization: Smooth quantile normalization

In lumi: BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

Description

Smooth quantile normalization with a reference sample

Usage

smoothQuantileNormalization(dataMatrix, ref = NULL, adjData=NULL, logMode = TRUE, bandwidth = NULL, degree = 1, verbose = FALSE, ...)

Arguments

dataMatrix	a matrix of microarray intensity data
ref	a vector of reference sample intensity, which matches the dataMatrix
adjData	data to be adjusted based on the ref and dataMatrix distribution
logMode	whether perform the analysis in log2 scale
bandwidth	a parameter used by locpoly
degree	a parameter used by locpoly
verbose	whether print the processing sample names
...	other parameters used by locpoly

Value

a data matrix with intensity normalized.

Author(s)

Pan DU

See Also

See Also adjColorBias.quantile

lumi documentation built on Nov. 8, 2020, 5:27 p.m.