netSmooth: Network smoothing for scRNAseq

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

Package details

AuthorJonathan Ronen [aut, cre], Altuna Akalin [aut]
Bioconductor views Clustering DimensionReduction GeneExpression GraphAndNetwork Network Normalization Preprocessing RNASeq Sequencing SingleCell Transcriptomics
MaintainerJonathan Ronen <[email protected]>
LicenseGPL-3
Version1.2.0
URL https://github.com/BIMSBbioinfo/netSmooth
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("netSmooth")

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netSmooth documentation built on Nov. 1, 2018, 3:46 a.m.