netSmooth: Network smoothing for scRNAseq

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

Package details

AuthorJonathan Ronen [aut, cre], Altuna Akalin [aut]
Bioconductor views Clustering DimensionReduction GeneExpression GraphAndNetwork Network Normalization Preprocessing RNASeq Sequencing SingleCell Transcriptomics
MaintainerJonathan Ronen <yablee@gmail.com>
LicenseGPL-3
Version1.8.0
URL https://github.com/BIMSBbioinfo/netSmooth
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("netSmooth")

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netSmooth documentation built on April 29, 2020, 3:30 a.m.