netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.
|Author||Jonathan Ronen [aut, cre], Altuna Akalin [aut]|
|Bioconductor views||Clustering DimensionReduction GeneExpression GraphAndNetwork Network Normalization Preprocessing RNASeq Sequencing SingleCell Transcriptomics|
|Maintainer||Jonathan Ronen <[email protected]>|
|Package repository||View on Bioconductor|
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