Man pages for netSmooth
Network smoothing for scRNAseq

calc2DEntropyCalculate entropy in 2D data
clusterExperimentWorkflowPerforms clustering workflow using 'clusterExperiment'...
clusterOneRun one clustering using kmeans o PAM
dimReduceGet lower dimension embedding
human.ppiHuman Protein-Protein interaction graph
l1NormalizeColumnsColumn-normalize a sparse, symmetric matrix (using the l1...
l1NormalizeRowsRow-normalize a sparse, symmetric matrix (using the l1 norm)...
mouse.ppiMouse Protein-Protein interaction graph
netSmoothPerform network smoothing of gene expression or other omics...
pickDimReductionPick the dimensionality reduction method for a dataset that...
projectFromNetworkRecombineCombine gene expression from smoothed space (that of the...
projectOnNetworkProject the gene expression matrix onto a lower space of the...
randomWalkByIterationsSmooth data on graph by computing iterations
randomWalkByMatrixInvSmooth data on graph by computing the closed-form steady...
randomWalkBySolve-matrix-methodSmooth data on graph by solving the linear equation (I -...
robustClustersPerform robust clustering on dataset, and calculate the...
scoreSmoothingCalculate a score for a smoothing result, for picking the...
smallPPIA small human Protein-Protein interaction graph for use in...
smallscRNAseqA small single cell RNA-seq dataset for use in examples.
smoothAndRecombinePerform network smoothing on network when the network genes...
netSmooth documentation built on Nov. 1, 2018, 3:46 a.m.