projectFromNetworkRecombine-matrix-method: Combine gene expression from smoothed space (that of the...

Description Usage Arguments Value

Description

Combine gene expression from smoothed space (that of the network) with the expression of genes that were not smoothed (not present in network)

Usage

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## S4 method for signature 'matrix'
projectFromNetworkRecombine(original_expression, smoothed_expression)

Arguments

original_expression

the non-smoothed expression

smoothed_expression

the smoothed gene expression, in the space of the genes defined by the network

filepath

String: Path to location where hdf5 output file is supposed to be saved. Will be ignored when regular matrices or SummarizedExperiment are used as input.

Value

a matrix in the dimensions of original_expression, where values that are present in smoothed_expression are copied from there.


netSmooth documentation built on Nov. 8, 2020, 5:33 p.m.