HTSFilter: Filter replicated high-throughput transcriptome sequencing data

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

AuthorAndrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic
Date of publicationNone
MaintainerAndrea Rau <andrea.rau@jouy.inra.fr>
LicenseArtistic-2.0
Version1.14.1

View on Bioconductor

Functions

HTSBasicFilter Man page
HTSBasicFilter,CountDataSet-method Man page
HTSBasicFilter,data.frame-method Man page
HTSBasicFilter,DESeqDataSet-method Man page
HTSBasicFilter,DGEExact-method Man page
HTSBasicFilter,DGEGLM-method Man page
HTSBasicFilter,DGEList-method Man page
HTSBasicFilter,DGELRT-method Man page
HTSBasicFilter,matrix-method Man page
HTSFilter Man page
HTSFilter,CountDataSet-method Man page
HTSFilter,data.frame-method Man page
HTSFilter-deprecated Man page
HTSFilter,DESeqDataSet-method Man page
HTSFilter,DGEExact-method Man page
HTSFilter,DGEGLM-method Man page
HTSFilter,DGEList-method Man page
HTSFilter,DGELRT-method Man page
HTSFilter,matrix-method Man page
HTSFilter-methods Man page
HTSFilter-package Man page
normalizeData Man page
sultan Man page

Files

HTSFilter/DESCRIPTION
HTSFilter/NAMESPACE
HTSFilter/R
HTSFilter/R/HTSBasicFilter-methods.R HTSFilter/R/HTSFilter-methods.R HTSFilter/R/HTSFilter_package.R HTSFilter/R/functions.R HTSFilter/R/normalizeData.R
HTSFilter/build
HTSFilter/build/vignette.rds
HTSFilter/data
HTSFilter/data/sultan.RData
HTSFilter/inst
HTSFilter/inst/CITATION
HTSFilter/inst/NEWS
HTSFilter/inst/doc
HTSFilter/inst/doc/HTSFilter.R
HTSFilter/inst/doc/HTSFilter.Rnw
HTSFilter/inst/doc/HTSFilter.pdf
HTSFilter/inst/examples
HTSFilter/inst/examples/HTSBasicFilter.R
HTSFilter/inst/examples/HTSFilter-package.R
HTSFilter/man
HTSFilter/man/HTSBasicFilter.Rd HTSFilter/man/HTSFilter-deprecated.Rd HTSFilter/man/HTSFilter-package.Rd HTSFilter/man/HTSFilter.Rd HTSFilter/man/normalizeData.Rd HTSFilter/man/sultan.Rd
HTSFilter/tests
HTSFilter/tests/testthat
HTSFilter/tests/testthat.R
HTSFilter/tests/testthat/test-xyz.R
HTSFilter/vignettes
HTSFilter/vignettes/Compile_HTSFilter.R
HTSFilter/vignettes/HTSFilter.Rnw
HTSFilter/vignettes/vignette_refs.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.