HTSFilter: Filter replicated high-throughput transcriptome sequencing data

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("HTSFilter")
AuthorAndrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic
Bioconductor views DifferentialExpression GeneExpression Normalization Preprocessing RNASeq Sequencing
Date of publicationNone
MaintainerAndrea Rau <andrea.rau@jouy.inra.fr>
LicenseArtistic-2.0
Version1.14.1

View on Bioconductor

Functions

HTSBasicFilter Man page
HTSBasicFilter,CountDataSet-method Man page
HTSBasicFilter,data.frame-method Man page
HTSBasicFilter,DESeqDataSet-method Man page
HTSBasicFilter,DGEExact-method Man page
HTSBasicFilter,DGEGLM-method Man page
HTSBasicFilter,DGEList-method Man page
HTSBasicFilter,DGELRT-method Man page
HTSBasicFilter,matrix-method Man page
HTSFilter Man page
HTSFilter,CountDataSet-method Man page
HTSFilter,data.frame-method Man page
HTSFilter-deprecated Man page
HTSFilter,DESeqDataSet-method Man page
HTSFilter,DGEExact-method Man page
HTSFilter,DGEGLM-method Man page
HTSFilter,DGEList-method Man page
HTSFilter,DGELRT-method Man page
HTSFilter,matrix-method Man page
HTSFilter-methods Man page
HTSFilter-package Man page
normalizeData Man page
sultan Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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