LuyiTian/scPipe: pipeline for single cell RNA-seq data analysis

A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

Getting started

Package details

AuthorLuyi Tian
Bioconductor views GeneExpression GenomeAnnotation ImmunoOncology Preprocessing QualityControl RNASeq SequenceMatching Sequencing SingleCell Software Visualization
MaintainerLuyi Tian <tian.l@wehi.edu.au>
LicenseGPL (>= 2)
Version1.9.4
URL https://github.com/LuyiTian/scPipe
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("LuyiTian/scPipe")
LuyiTian/scPipe documentation built on Jan. 11, 2021, 9:34 p.m.