LuyiTian/scPipe: pipeline for single cell RNA-seq data analysis
Version 1.0.8

A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

Getting started

Package details

AuthorLuyi Tian
Bioconductor views GeneExpression GenomeAnnotation Preprocessing QualityControl RNASeq SequenceMatching Sequencing SingleCell Software Visualization
MaintainerLuyi Tian <[email protected]>
LicenseGPL (>= 2)
Version1.0.8
URL https://github.com/LuyiTian/scPipe
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("LuyiTian/scPipe")
LuyiTian/scPipe documentation built on March 22, 2018, 3:52 p.m.