LuyiTian/scPipe: pipeline for single cell RNA-seq data analysis

A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.

Getting started

Package details

AuthorLuyi Tian
Bioconductor views GeneExpression GenomeAnnotation ImmunoOncology Preprocessing QualityControl RNASeq SequenceMatching Sequencing SingleCell Software Visualization
MaintainerLuyi Tian <>
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
LuyiTian/scPipe documentation built on Dec. 25, 2021, 1:46 p.m.