A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.
|Bioconductor views||GeneExpression GenomeAnnotation Preprocessing QualityControl RNASeq SequenceMatching Sequencing SingleCell Software Visualization|
|Maintainer||Luyi Tian <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on GitHub|
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