sc_atac_peak_calling: sc_atac_peak_calling()

In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing

sc_atac_peak_calling()

Description

sc_atac_peak_calling()

Usage

sc_atac_peak_calling(
  inbam,
  ref = NULL,
  genome_size = NULL,
  output_folder = NULL
)

Arguments

inbam	The input tagged, sorted, duplicate-free input BAM file
ref	The reference genome file
genome_size	The size of the genome
output_folder	The path of the output folder

Value

None (invisible 'NULL')

Examples

## Not run: 
sc_atac_peak_calling(
    inbam,
    reference) 

## End(Not run)

LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.