sc_atac_create_cell_qc_metrics: generating a file useful for producing the qc plots

In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing

generating a file useful for producing the qc plots

Description

uses the peak file and annotation files for features

Usage

sc_atac_create_cell_qc_metrics(
  frags_file,
  peaks_file,
  promoters_file,
  tss_file,
  enhs_file,
  output_folder
)

Arguments

frags_file	The fragment file
peaks_file	The peak file
promoters_file	The path of the promoter annotation file
tss_file	The path of the tss annotation file
enhs_file	The path of the enhs annotation file
output_folder	The path of the output folder for resultant files

Value

Nothing (Invisible 'NULL')

LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.