sc_atac_create_report: HTML report generation
In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing

sc_atac_create_report

R Documentation

HTML report generation

Description

Generates a HTML report using the output folder produced by the pipeline

Usage

sc_atac_create_report(
  input_folder,
  output_folder = NULL,
  organism = NULL,
  sample_name = NULL,
  feature_type = NULL,
  n_barcode_subset = 500
)

Arguments

`input_folder`	The path of the folder produced by the pipeline
`output_folder`	The path of the output folder to store the HTML report in
`organism`	A string indicating the name of the organism being analysed
`sample_name`	A string indicating the name of the sample
`feature_type`	A string indicating the type of the feature ('genome_bin' or 'peak')
`n_barcode_subset`	if you require only to visualise stats for a sample of barcodes to improve processing time (integer)