QC_metrics: Get or set quality control metrics in a SingleCellExperiment...
In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing

QC_metrics

R Documentation

Get or set quality control metrics in a SingleCellExperiment object

Description

Get or set quality control metrics in a SingleCellExperiment object

Usage

QC_metrics(object)

QC_metrics(object) <- value

QC_metrics.sce(object)

## S4 method for signature 'SingleCellExperiment'
QC_metrics(object)

## S4 replacement method for signature 'SingleCellExperiment'
QC_metrics(object) <- value

Arguments

`object`	A `SingleCellExperiment` object.
`value`	Value to be assigned to corresponding object.

Value

a dataframe of quality control matrics

A DataFrame of quality control metrics.

Author(s)

Luyi Tian

Examples

data("sc_sample_data")
data("sc_sample_qc")
sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data)))
QC_metrics(sce) = sc_sample_qc

head(QC_metrics(sce))

LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.