sc_atac_tfidf: generating the UMAPs for sc-ATAC-Seq preprocessed data

In LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing

generating the UMAPs for sc-ATAC-Seq preprocessed data

Description

Takes the binary matrix and generate a TF-IDF so the clutering can take place on the reduced dimentions.

Usage

sc_atac_tfidf(binary.mat, output_folder = NULL)

Arguments

binary.mat	The final, filtered feature matrix in binary format
output_folder	The path of the output folder

Value

None (invisible 'NULL')

Examples

## Not run: 
sc_atac_tfidf(binary.mat = final_binary_matrix) 

## End(Not run)

LuyiTian/scPipe documentation built on Dec. 11, 2023, 8:21 p.m.