altcdfenvs: alternative CDF environments (aka probeset mappings)

Convenience data structures and functions to handle cdfenvs

AuthorLaurent Gautier <lgautier@gmail.com>
Date of publicationNone
MaintainerLaurent Gautier <lgautier@gmail.com>
LicenseGPL (>= 2)
Version2.36.0

View on Bioconductor

Files in this package

altcdfenvs/DESCRIPTION
altcdfenvs/NAMESPACE
altcdfenvs/R
altcdfenvs/R/CdfEnv.R altcdfenvs/R/appendCdfEnvAffy.R altcdfenvs/R/buildCdfEnv.biostrings.R altcdfenvs/R/buildCdfEnv.matchprobes.R altcdfenvs/R/cdfenvs.R altcdfenvs/R/copyCdfEnvAffy.R altcdfenvs/R/readFASTA.R altcdfenvs/R/removeIndex.R altcdfenvs/R/unique.CdfEnvAffy.R
altcdfenvs/build
altcdfenvs/build/vignette.rds
altcdfenvs/data
altcdfenvs/data/cdfenvEx.rda
altcdfenvs/inst
altcdfenvs/inst/CITATION
altcdfenvs/inst/UnitTests
altcdfenvs/inst/UnitTests/AffyProbesMatch_test.R
altcdfenvs/inst/doc
altcdfenvs/inst/doc/altcdfenvs.R
altcdfenvs/inst/doc/altcdfenvs.Rnw
altcdfenvs/inst/doc/altcdfenvs.pdf
altcdfenvs/inst/doc/modify.R
altcdfenvs/inst/doc/modify.Rnw
altcdfenvs/inst/doc/modify.pdf
altcdfenvs/inst/doc/ngenomeschips.R
altcdfenvs/inst/doc/ngenomeschips.Rnw
altcdfenvs/inst/doc/ngenomeschips.pdf
altcdfenvs/inst/exampleData
altcdfenvs/inst/exampleData/Plasmodium-Probeset-IDs.txt
altcdfenvs/inst/exampleData/sample.fasta
altcdfenvs/inst/exampleData/slamf_targets.RData
altcdfenvs/inst/internalData
altcdfenvs/inst/internalData/chipspecs.tab
altcdfenvs/man
altcdfenvs/man/AffyProbesMatch-class.Rd altcdfenvs/man/CdfEnvAffy-class.Rd altcdfenvs/man/appendCdfEnvAffy.Rd altcdfenvs/man/buildCdfEnv.biostrings.Rd altcdfenvs/man/cdfenv.Rd altcdfenvs/man/cdfenvEx.Rd altcdfenvs/man/copyCdfEnvAffy.Rd altcdfenvs/man/countduplicated.Rd altcdfenvs/man/geneNames.Rd altcdfenvs/man/getxy.probeseq.Rd altcdfenvs/man/index2xy.Rd altcdfenvs/man/indexProbes.CdfEnvAffy.Rd altcdfenvs/man/matchAffyProbes.Rd altcdfenvs/man/plot.CdfEnvAffy.Rd altcdfenvs/man/removeIndex.Rd altcdfenvs/man/toHypergraph.Rd altcdfenvs/man/unique.CdfEnvAffy.Rd altcdfenvs/man/utils.FASTA.Rd altcdfenvs/man/validAffyBatch.Rd
altcdfenvs/vignettes
altcdfenvs/vignettes/altcdfenvs.Rnw
altcdfenvs/vignettes/modify.Rnw
altcdfenvs/vignettes/ngenomeschips.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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