Man pages for altcdfenvs
alternative CDF environments (aka probeset mappings)
| AffyProbesMatch-class | Class "AffyProbesMatch" |
| appendCdfEnvAffy | append probe sets to a CdfEnvAffy |
| buildCdfEnv.biostrings | Build CDF environments |
| cdfenv | functions related to cdfenvs |
| CdfEnvAffy-class | Class "CdfEnvAffy" |
| cdfenvEx | CdfEnvAffy |
| copyCdfEnvAffy | make a copy of a CdfEnvAffy |
| countduplicated | Count the number of times probes are used |
| geneNames | get the names of the known probe sets |
| getxy.probeseq | A function to get the XY coordinates from a probes sequences... |
| index2xy | Functions to shuttle from indexes to XY coordinates |
| indexProbes.CdfEnvAffy | indexes for probes |
| matchAffyProbes | Match the probes on an Affymetrix array |
| plot.CdfEnvAffy | A function to 'plot' a CdfEnvAffy |
| removeIndex | A function to remove probes in an environment |
| toHypergraph | Transform to an hypergraph |
| unique.CdfEnvAffy | Remove duplicated elements from a CdfEnvAffy |
| utils.FASTA | Functions to work with FASTA files / connections |
| validAffyBatch | Check validity of a CdfEnvAffy. |
