AffyProbesMatch-class: Class "AffyProbesMatch"

In altcdfenvs: alternative CDF environments (aka probeset mappings)

Description

Store the results of a call to matchAffyProbes.

Objects from the Class

Objects can be created by calls of the form new("AffyProbesMatch", ...).

An object will store the result of matching probe sequences against target sequences.

Slots

pm:

Object of class "list": each element is vector of index values

mm:

Object of class "list": each element is vector of index values

labels:

Object of class "character"

chip_type:

Object of class "character" and of length 1.

probes:

Object of class "ANY": the probetable object used to perform the matches.

Methods

combine

signature(x = "AffyProbesMatch", y = "AffyProbesMatch"): combine two instances. This is can be useful when splitting the list of target sequences to parallelized the job.

show

signature(x = "AffyProbesMatch"):Show the instance.

toHypergraph

signature(object = "AffyProbesMatch"): build an Hypergraph from the matches.

Examples

showClass("AffyProbesMatch")

altcdfenvs documentation built on Nov. 8, 2020, 7:12 p.m.