affypdnn: Probe Dependent Nearest Neighbours (PDNN) for the affy package

The package contains functions to perform the PDNN method described by Li Zhang et al.

AuthorH. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).
Date of publicationNone
MaintainerLaurent Gautier<lgautier@gmail.com>
LicenseLGPL
Version1.48.0

View on Bioconductor

Files

affypdnn/DESCRIPTION
affypdnn/NAMESPACE
affypdnn/R
affypdnn/R/expressopdnn.R affypdnn/R/find.params.pdnn.R affypdnn/R/generateExprVal.method.pdnn.R affypdnn/R/pdnn.params.chiptype.R affypdnn/R/transform.ProbeSet.R affypdnn/R/zzz.R
affypdnn/build
affypdnn/build/vignette.rds
affypdnn/data
affypdnn/data/datalist
affypdnn/data/hgu95av2.pdnn.params.rda
affypdnn/data/params.dilution.rda
affypdnn/inst
affypdnn/inst/CITATION
affypdnn/inst/doc
affypdnn/inst/doc/affypdnn.R
affypdnn/inst/doc/affypdnn.Rnw
affypdnn/inst/doc/affypdnn.pdf
affypdnn/inst/exampleData
affypdnn/inst/exampleData/pdnn-energy-parameter_hg-u133a.txt
affypdnn/inst/exampleData/pdnn-energy-parameter_hg-u95av2.txt
affypdnn/inst/exampleData/pdnn-energy-parameter_mg-u74av2.txt
affypdnn/man
affypdnn/man/chiptype.pdnn.params.Rd affypdnn/man/expressopdnn.Rd affypdnn/man/find.params.pdnn.Rd affypdnn/man/generateExprVal.method.pdnn.Rd affypdnn/man/matplotProbesPDNN.Rd affypdnn/man/params.dilution.Rd affypdnn/man/pdnn.params.chiptype.Rd affypdnn/man/transform.ProbeSet.Rd
affypdnn/vignettes
affypdnn/vignettes/affypdnn.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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