affypdnn: Probe Dependent Nearest Neighbours (PDNN) for the affy package

The package contains functions to perform the PDNN method described by Li Zhang et al.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("affypdnn")
AuthorH. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).
Bioconductor views Microarray OneChannel Preprocessing
Date of publicationNone
MaintainerLaurent Gautier<lgautier@gmail.com>
LicenseLGPL
Version1.48.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/expressopdnn.R R/find.params.pdnn.R R/generateExprVal.method.pdnn.R R/pdnn.params.chiptype.R R/transform.ProbeSet.R R/zzz.R
build
build/vignette.rds
data
data/datalist
data/hgu95av2.pdnn.params.rda
data/params.dilution.rda
inst
inst/CITATION
inst/doc
inst/doc/affypdnn.R
inst/doc/affypdnn.Rnw
inst/doc/affypdnn.pdf
inst/exampleData
inst/exampleData/pdnn-energy-parameter_hg-u133a.txt
inst/exampleData/pdnn-energy-parameter_hg-u95av2.txt
inst/exampleData/pdnn-energy-parameter_mg-u74av2.txt
man
man/chiptype.pdnn.params.Rd man/expressopdnn.Rd man/find.params.pdnn.Rd man/generateExprVal.method.pdnn.Rd man/matplotProbesPDNN.Rd man/params.dilution.Rd man/pdnn.params.chiptype.Rd man/transform.ProbeSet.Rd
vignettes
vignettes/affypdnn.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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