miRNAmeConverter: Convert miRNA Names to Different miRBase Versions

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Package containing an S4 class for translating mature miRNA names to different miRBase versions, sequence retrieval, checking names for validity and detecting miRBase version of a given set of names (data from http://www.mirbase.org/).

Author
Stefan Haunsberger [aut, cre]
Date of publication
None
Maintainer
Stefan J. Haunsberger <stefan.haunsberger@gmail.com>
License
Artistic-2.0
Version
1.2.0

View on Bioconductor

Man pages

assessMiRNASwappingMIMAT
Check if given miRNA names can be assigned to unique MIMAT...
assessVersion
Assess miRBase version
checkMiRNAName
Check miRNA names for validity
currentVersion
Get current version
currentVersion-set
Set current version
example.miRNAs
miRNA names.
miRNAmeConverter
MiRNANameConverter constructor
MiRNANameConverter
Instantiate from MiRNANameConverter class
MiRNANameConverter-ANY-method
MiRNANameConverter constructor
nOrganisms
Get number of organisms
nOrganisms-set
Set number of organisms
nTotalEntries
Get total number database entries
nTotalEntries-set
Set total number database entries
saveResults
Save miRNA translation results
show-MiRNANameConverter-method
Show-method
translateMiRNAName
Translate miRNA name
validOrganisms
Get valid organisms
validOrganisms-set
Set valid organisms
validVersions
Get valid versions
validVersions-set
Set valid versions

Files in this package

miRNAmeConverter/DESCRIPTION
miRNAmeConverter/NAMESPACE
miRNAmeConverter/R
miRNAmeConverter/R/MiRNANameConverter.R
miRNAmeConverter/R/data.R
miRNAmeConverter/R/getters.R
miRNAmeConverter/R/printFunctionEntryInformation.R
miRNAmeConverter/R/printFunctionExitInformation.R
miRNAmeConverter/R/setters.R
miRNAmeConverter/build
miRNAmeConverter/build/vignette.rds
miRNAmeConverter/data
miRNAmeConverter/data/example-miRNAs.rdata
miRNAmeConverter/inst
miRNAmeConverter/inst/CITATION
miRNAmeConverter/inst/NEWS
miRNAmeConverter/inst/doc
miRNAmeConverter/inst/doc/miRNAmeConverter-vignette.R
miRNAmeConverter/inst/doc/miRNAmeConverter-vignette.Rmd
miRNAmeConverter/inst/doc/miRNAmeConverter-vignette.pdf
miRNAmeConverter/man
miRNAmeConverter/man/MiRNANameConverter-ANY-method.Rd
miRNAmeConverter/man/MiRNANameConverter.Rd
miRNAmeConverter/man/assessMiRNASwappingMIMAT.Rd
miRNAmeConverter/man/assessVersion.Rd
miRNAmeConverter/man/checkMiRNAName.Rd
miRNAmeConverter/man/currentVersion-set.Rd
miRNAmeConverter/man/currentVersion.Rd
miRNAmeConverter/man/example.miRNAs.Rd
miRNAmeConverter/man/miRNAmeConverter.Rd
miRNAmeConverter/man/nOrganisms-set.Rd
miRNAmeConverter/man/nOrganisms.Rd
miRNAmeConverter/man/nTotalEntries-set.Rd
miRNAmeConverter/man/nTotalEntries.Rd
miRNAmeConverter/man/saveResults.Rd
miRNAmeConverter/man/show-MiRNANameConverter-method.Rd
miRNAmeConverter/man/translateMiRNAName.Rd
miRNAmeConverter/man/validOrganisms-set.Rd
miRNAmeConverter/man/validOrganisms.Rd
miRNAmeConverter/man/validVersions-set.Rd
miRNAmeConverter/man/validVersions.Rd
miRNAmeConverter/tests
miRNAmeConverter/tests/testthat
miRNAmeConverter/tests/testthat.R
miRNAmeConverter/tests/testthat/names.txt
miRNAmeConverter/tests/testthat/test-assessMiRNASwappingMIMAT.R
miRNAmeConverter/tests/testthat/test-assessVersion.R
miRNAmeConverter/tests/testthat/test-checkMiRNAName.R
miRNAmeConverter/tests/testthat/test-checkMiRNANameConverter.R
miRNAmeConverter/tests/testthat/test-translateMiRNAName.R
miRNAmeConverter/vignettes
miRNAmeConverter/vignettes/apa.csl
miRNAmeConverter/vignettes/class-diagram.png
miRNAmeConverter/vignettes/miRNAmeConverter-vignette.Rmd
miRNAmeConverter/vignettes/references.bib