miRNAmeConverter: Convert miRNA Names to Different miRBase Versions

Package containing an S4 class for translating mature miRNA names to different miRBase versions, sequence retrieval, checking names for validity and detecting miRBase version of a given set of names (data from http://www.mirbase.org/).

AuthorStefan Haunsberger [aut, cre]
Date of publicationNone
MaintainerStefan J. Haunsberger <stefan.haunsberger@gmail.com>
LicenseArtistic-2.0
Version1.2.0

View on Bioconductor

Functions

assessMiRNASwappingMIMAT Man page
assessVersion Man page
assessVersion,MiRNANameConverter-method Man page
checkMiRNAName Man page
checkMiRNAName,MiRNANameConverter-method Man page
currentVersion Man page
currentVersion<- Man page
currentVersion,MiRNANameConverter-method Man page
example.miRNAs Man page
miRNAmeConverter Man page
miRNAmeConverter-package Man page
MiRNANameConverter Man page
MiRNANameConverter,ANY-method Man page
nOrganisms Man page
nOrganisms<- Man page
nOrganisms,MiRNANameConverter-method Man page
nTotalEntries Man page
nTotalEntries<- Man page
nTotalEntries,MiRNANameConverter-method Man page
saveResults Man page
saveResults,MiRNANameConverter,data.frame-method Man page
show,MiRNANameConverter-method Man page
translateMiRNAName Man page
translateMiRNAName,MiRNANameConverter,character-method Man page
validOrganisms Man page
validOrganisms<- Man page
validOrganisms,MiRNANameConverter-method Man page
validVersions Man page
validVersions<- Man page
validVersions,MiRNANameConverter-method Man page

Files

miRNAmeConverter/DESCRIPTION
miRNAmeConverter/NAMESPACE
miRNAmeConverter/R
miRNAmeConverter/R/MiRNANameConverter.R miRNAmeConverter/R/data.R miRNAmeConverter/R/getters.R miRNAmeConverter/R/printFunctionEntryInformation.R miRNAmeConverter/R/printFunctionExitInformation.R miRNAmeConverter/R/setters.R
miRNAmeConverter/build
miRNAmeConverter/build/vignette.rds
miRNAmeConverter/data
miRNAmeConverter/data/example-miRNAs.rdata
miRNAmeConverter/inst
miRNAmeConverter/inst/CITATION
miRNAmeConverter/inst/NEWS
miRNAmeConverter/inst/doc
miRNAmeConverter/inst/doc/miRNAmeConverter-vignette.R
miRNAmeConverter/inst/doc/miRNAmeConverter-vignette.Rmd
miRNAmeConverter/inst/doc/miRNAmeConverter-vignette.pdf
miRNAmeConverter/man
miRNAmeConverter/man/MiRNANameConverter-ANY-method.Rd miRNAmeConverter/man/MiRNANameConverter.Rd miRNAmeConverter/man/assessMiRNASwappingMIMAT.Rd miRNAmeConverter/man/assessVersion.Rd miRNAmeConverter/man/checkMiRNAName.Rd miRNAmeConverter/man/currentVersion-set.Rd miRNAmeConverter/man/currentVersion.Rd miRNAmeConverter/man/example.miRNAs.Rd miRNAmeConverter/man/miRNAmeConverter.Rd miRNAmeConverter/man/nOrganisms-set.Rd miRNAmeConverter/man/nOrganisms.Rd miRNAmeConverter/man/nTotalEntries-set.Rd miRNAmeConverter/man/nTotalEntries.Rd miRNAmeConverter/man/saveResults.Rd miRNAmeConverter/man/show-MiRNANameConverter-method.Rd miRNAmeConverter/man/translateMiRNAName.Rd miRNAmeConverter/man/validOrganisms-set.Rd miRNAmeConverter/man/validOrganisms.Rd miRNAmeConverter/man/validVersions-set.Rd miRNAmeConverter/man/validVersions.Rd
miRNAmeConverter/tests
miRNAmeConverter/tests/testthat
miRNAmeConverter/tests/testthat.R
miRNAmeConverter/tests/testthat/names.txt
miRNAmeConverter/tests/testthat/test-assessMiRNASwappingMIMAT.R
miRNAmeConverter/tests/testthat/test-assessVersion.R
miRNAmeConverter/tests/testthat/test-checkMiRNAName.R
miRNAmeConverter/tests/testthat/test-checkMiRNANameConverter.R
miRNAmeConverter/tests/testthat/test-translateMiRNAName.R
miRNAmeConverter/vignettes
miRNAmeConverter/vignettes/apa.csl
miRNAmeConverter/vignettes/class-diagram.png
miRNAmeConverter/vignettes/miRNAmeConverter-vignette.Rmd
miRNAmeConverter/vignettes/references.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.