miRNAmeConverter: Convert miRNA Names to Different miRBase Versions
Version 1.4.0

Package containing an S4 class for translating mature miRNA names to different miRBase versions, sequence retrieval, checking names for validity and detecting miRBase version of a given set of names (data from http://www.mirbase.org/).

Browse man pages Browse package API and functions Browse package files

AuthorStefan Haunsberger [aut, cre]
Bioconductor views Preprocessing miRNA
Date of publicationNone
MaintainerStefan J. Haunsberger <stefan.haunsberger@gmail.com>
LicenseArtistic-2.0
Version1.4.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("miRNAmeConverter")

Man pages

assessMiRNASwappingMIMAT: Check if given miRNA names can be assigned to unique MIMAT...
assessVersion: Assess miRBase version
checkMiRNAName: Check miRNA names for validity
currentVersion: Get current version
currentVersion-set: Set current version
example.miRNAs: miRNA names.
miRNAmeConverter: MiRNANameConverter constructor
MiRNANameConverter: Instantiate from MiRNANameConverter class
MiRNANameConverter-ANY-method: MiRNANameConverter constructor
nOrganisms: Get number of organisms
nOrganisms-set: Set number of organisms
nTotalEntries: Get total number database entries
nTotalEntries-set: Set total number database entries
saveResults: Save miRNA translation results
show-MiRNANameConverter-method: Show-method
translateMiRNAName: Translate miRNA name
validOrganisms: Get valid organisms
validOrganisms-set: Set valid organisms
validVersions: Get valid versions
validVersions-set: Set valid versions

Functions

MiRNANameConverter Man page
MiRNANameConverter,ANY-method Man page
assessMiRNASwappingMIMAT Man page
assessVersion Man page
assessVersion,MiRNANameConverter-method Man page
check Source code
checkMiRNAName Man page
checkMiRNAName,MiRNANameConverter-method Man page
currentVersion Man page
currentVersion,MiRNANameConverter-method Man page
currentVersion<- Man page
example.miRNAs Man page
miRNAmeConverter Man page
miRNAmeConverter-package Man page
nOrganisms Man page
nOrganisms,MiRNANameConverter-method Man page
nOrganisms<- Man page
nTotalEntries Man page
nTotalEntries,MiRNANameConverter-method Man page
nTotalEntries<- Man page
printFunctionEntryInformation Source code
printFunctionExitInformation Source code
saveResults Man page
saveResults,MiRNANameConverter,data.frame-method Man page
show,MiRNANameConverter-method Man page
translateMiRNAName Man page
translateMiRNAName,MiRNANameConverter,character-method Man page
validOrganisms Man page
validOrganisms,MiRNANameConverter-method Man page
validOrganisms<- Man page
validVersions Man page
validVersions,MiRNANameConverter-method Man page
validVersions<- Man page

Files

DESCRIPTION
NAMESPACE
R
R/MiRNANameConverter.R
R/data.R
R/getters.R
R/printFunctionEntryInformation.R
R/printFunctionExitInformation.R
R/setters.R
build
build/vignette.rds
data
data/example-miRNAs.rdata
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/miRNAmeConverter-vignette.R
inst/doc/miRNAmeConverter-vignette.Rmd
inst/doc/miRNAmeConverter-vignette.pdf
man
man/MiRNANameConverter-ANY-method.Rd
man/MiRNANameConverter.Rd
man/assessMiRNASwappingMIMAT.Rd
man/assessVersion.Rd
man/checkMiRNAName.Rd
man/currentVersion-set.Rd
man/currentVersion.Rd
man/example.miRNAs.Rd
man/miRNAmeConverter.Rd
man/nOrganisms-set.Rd
man/nOrganisms.Rd
man/nTotalEntries-set.Rd
man/nTotalEntries.Rd
man/saveResults.Rd
man/show-MiRNANameConverter-method.Rd
man/translateMiRNAName.Rd
man/validOrganisms-set.Rd
man/validOrganisms.Rd
man/validVersions-set.Rd
man/validVersions.Rd
tests
tests/testthat
tests/testthat.R
tests/testthat/names.txt
tests/testthat/test-assessMiRNASwappingMIMAT.R
tests/testthat/test-assessVersion.R
tests/testthat/test-checkMiRNAName.R
tests/testthat/test-checkMiRNANameConverter.R
tests/testthat/test-translateMiRNAName.R
vignettes
vignettes/apa.csl
vignettes/class-diagram.png
vignettes/miRNAmeConverter-vignette.Rmd
vignettes/references.bib
miRNAmeConverter documentation built on May 20, 2017, 10:20 p.m.