The Cancer Genome Atlas (TCGA) Data Portal provides a platform for researchers to search, download, and analyze data sets generated by TCGA. It contains clinical information, genomic characterization data, and high level sequence analysis of the tumor genomes. The key is to understand genomics to improve cancer care. RTCGA package offers download and integration of the variety and volume of TCGA data using patient barcode key, what enables easier data possession. This may have an benefcial infuence on impact on development of science and improvement of patients' treatment. Furthermore, RTCGA package transforms TCGA data to tidy form which is convenient to use.
|Author||Marcin Kosinski <email@example.com>, Przemyslaw Biecek <firstname.lastname@example.org>|
|Date of publication||None|
|Maintainer||Marcin Kosinski <email@example.com>|
boxplotTCGA: Create Boxplots for TCGA Datasets
checkTCGA: Information about datasets from TCGA project
convertTCGA: Convert data from RTCGA family to Bioconductor classes
datasetsTCGA: RTCGA.data - The Family of R Packages with Data from The...
downloadTCGA: Download TCGA data
expressionsTCGA: Gather Expressions for TCGA Datasets
heatmapTCGA: Create Heatmaps for TCGA Datasets
infoTCGA: Information about cohorts from TCGA project
installTCGA: Install packages from RTCGA family
kmTCGA: Plot Kaplan-Meier Estimates of Survival Curves for Survival...
mutationsTCGA: Gather Mutations for TCGA Datasets
pcaTCGA: Plot Two Main Components of Principal Component Analysis
readTCGA: Read TCGA data to the tidy format
RTCGA-package: The Caner Genome Atlas data integration
survivalTCGA: Extract Survival Information From RTCGA.clinical Datasets
theme_RTCGA: RTCGA Theme For ggplot2