installTCGA: Install packages from RTCGA family

In RTCGA: The Cancer Genome Atlas Data Integration

Description

Function installs data packages from https://github.com/RTCGA/. Packages are listed datasetsTCGA.

Usage

installTCGA(packages = c("RTCGA.clinical", "RTCGA.mutations", "RTCGA.rnaseq",
  "RTCGA.RPPA", "RTCGA.mRNA", "RTCGA.CNV", "RTCGA.miRNASeq", "RTCGA.PANCAN12",
  "RTCGA.methylation"), build_vignettes = TRUE, ...)

Arguments

packages	A character specifing the names of the data packages to be installed. By default installs all packages.
build_vignettes	Should vignettes be build.
...	Further arguments passed to install_github.

Issues

If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.

Author(s)

Marcin Kosinski, [e-mail]

See Also

RTCGA website http://rtcga.github.io/RTCGA.

Other RTCGA: RTCGA-package, boxplotTCGA, checkTCGA, convertTCGA, datasetsTCGA, downloadTCGA, expressionsTCGA, heatmapTCGA, infoTCGA, kmTCGA, mutationsTCGA, pcaTCGA, readTCGA, survivalTCGA, theme_RTCGA

Examples

## Not run: 
installTCGA()
installTCGA('RTCGA.clinical')

## End(Not run)

RTCGA documentation built on Nov. 8, 2020, 5:11 p.m.