affycomp: Graphics Toolbox for Assessment of Affymetrix Expression Measures

The package contains functions that can be used to compare expression measures for Affymetrix Oligonucleotide Arrays.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("affycomp")
AuthorRafael A. Irizarry <rafa@jhu.edu> and Zhijin Wu <zwu@stat.brown.edu> with contributions from Simon Cawley <simon_cawley@affymetrix.com>
Bioconductor views Microarray OneChannel Preprocessing
Date of publicationNone
MaintainerRafael A. Irizarry <rafa@jhu.edu>
LicenseGPL (>= 2)
Version1.52.0

View on Bioconductor

Functions

affycomp Man page
affycomp.compfig2 Man page
affycomp.compfig2b Man page
affycomp.compfig3 Man page
affycomp.compfig4a Man page
affycomp.compfig4b Man page
affycomp.compfig4c Man page
affycomp.compfig5a Man page
affycomp.compfig5b Man page
affycomp.compfig5c Man page
affycomp.compfig5cde Man page
affycomp.compfig5d Man page
affycomp.compfig5e Man page
affycomp.compfig7 Man page
affycomp.compfigs Man page
affycomp.compfigs.auxiliary Man page
affycomp.compfigs.calls Man page
affycomp.figure1 Man page
affycomp.figure1b Man page
affycomp.figure2 Man page
affycomp.figure2b Man page
affycomp.figure3 Man page
affycomp.figure4a Man page
affycomp.figure4b Man page
affycomp.figure4c Man page
affycomp.figure5a Man page
affycomp.figure5b Man page
affycomp.figure5c Man page
affycomp.figure5d Man page
affycomp.figure5e Man page
affycomp.figure6a Man page
affycomp.figure6b Man page
affycomp.figure7 Man page
affycomp.figure.calls Man page
affycomp.figures Man page
affycomp.figures.auxiliary Man page
affycompPlot Man page
affycompTable Man page
assessAll Man page
assessDilution Man page
assessFC Man page
assessFC2 Man page
assessLS Man page
assessMA Man page
assessMA2 Man page
assessSD Man page
assessSignal Man page
assessSpikeIn Man page
assessSpikeIn2 Man page
assessSpikeInSD Man page
dilution.phenodata Man page
exprset.log Man page
hgu133a.spikein.phenodata Man page
hgu133a.spikein.xhyb Man page
mas5.assessment Man page
read.dilution Man page
readin Man page
read.newspikein Man page
read.spikein Man page
remove.hgu133a.xhyb Man page
SD Man page
spikein.phenodata Man page
tableAll Man page
tableDilution Man page
tableFC Man page
tableFC2 Man page
tableLS Man page
tableMA2 Man page
tableOverallSNR Man page
tableRanks Man page
tableSD Man page
tableSignal Man page
tableSpikeInSD Man page

Files

DESCRIPTION
NAMESPACE
R
R/assess.R R/compfigs.R R/figures.R R/newfuncs.R R/readin.R R/table.R R/zzz.R
build
build/vignette.rds
data
data/datalist
data/dilution.phenodata.rda
data/hgu133a.spikein.phenodata.rda
data/hgu133a.spikein.xhyb.rda
data/mas5.assessment.rda
data/spikein.phenodata.rda
inst
inst/Rnw
inst/Rnw/Fig5cde.133.Rnw
inst/Rnw/Fig5cde.Rnw
inst/Rnw/comparison.Rnw
inst/Rnw/complete-assessment.Rnw
inst/Rnw/dilution-assessment.Rnw
inst/Rnw/simple.Rnw
inst/Rnw/spike-in-133-assessment.Rnw
inst/Rnw/spike-in-assessment.Rnw
inst/doc
inst/doc/affycomp.R
inst/doc/affycomp.Rnw
inst/doc/affycomp.pdf
man
man/SD.Rd man/affycomp.compfigs.auxiliary.Rd man/affycomp.figures.auxiliary.Rd man/affycomp.table.Rd man/affycompPlot.Rd man/assessAll.Rd man/assessDilution.Rd man/assessSD.Rd man/assessSpikeIn.Rd man/assessSpikeIn2.Rd man/dilution.phenodata.Rd man/exprset.log.Rd man/hgu133a.spikein.phenodata.Rd man/mas5.assessment.Rd man/readin.Rd man/remove.hgu133a.xhyb.Rd man/spikein.phenodata.Rd man/xhyb.Rd
vignettes
vignettes/affycomp.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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