Assessment functions for Spike In Data
These functions are assessment functions.
Each takes an
ExpressionSet and returns a list with necessary
information to create assessment plots.
1 2 3 4 5 6
Name of expression measure being assessed.
assessMA performs the assessment for the MA-plot (Figure 1),
assessSignal performs the assessment for signal detection plot
assessFC performs assessments used by fold-change
related plots (Figures 5a, 6a, 6b).
assessFC2 is for the ROC
for genes with nominal fold changes of 2 (Figure
assessSpikeIn is a wrapper for all these and returns a list
Lists with the necessary information to make the Figures.
Rafael A. Irizarry
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