assessAll: Assessment functions

In affycomp: Graphics Toolbox for Assessment of Affymetrix Expression Measures

Description

Assessment functions. Takes a couple of ExpressionSet, one for spike in another for the dilution and returns a list with necessary information to create assessment plots.

Usage

assessAll(d,s,method.name=NULL,verbose=TRUE)

affycomp(d,s,method.name=NULL,verbose=TRUE,return.it=TRUE)

Arguments

d	An ExpressionSet containing the expression measures for the Gene Logic's dilution experiment.
s	An ExpressionSet containing expression measures for the Affymetrix's spike-in experiment.
method.name	Name of expression measure being assessed.
verbose	verbosity flag.
return.it	if TRUE returns assessment lists.

Details

assessAll performs assessments for Figures 1-6. It is a wrapper for assessDilution and assessSpikeIn.

affycomp is a wrapper that does it all... including the plotting and creation of table.

Value

Lists with the necessary information to make the Figures.

Author(s)

Rafael A. Irizarry

affycomp documentation built on Nov. 8, 2020, 5:55 p.m.