readin: Read Expression Date Sets
In affycomp: Graphics Toolbox for Assessment of Affymetrix Expression Measures

Description Usage Arguments Details Value Author(s)

Reads a comma-delimited file containing the expression values of the dilution and spike-in data sets and creates a ExpressionSet

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read.dilution(filename)
read.spikein(filename, cdfName=c("hgu95a","hgu133a"), remove.xhyb=TRUE)
read.newspikein(filename)

`filename`	character containing the filename to be read.
`cdfName`	are we reading data from the hgu95a or hgu133a spike-in experiment?
`remove.xhyb`	logical. If `TRUE` possible cross hybridizers are removed from the HGU133A spikein. See `remove.hgu133a.xhyb`.

The file to be read must be comma-delimited with the first row containing the cel filenames (case sensitive). The first column must be the Affymetrix gene identifiers. read.dilution will put things in the right place.

read.newspikein is a wrapper to read results from the hgu133a spikein experiment.

An ExpressionSet.

Rafael A. Irizarry

affycomp documentation built on Nov. 8, 2020, 5:55 p.m.