DEGseq: Identify Differentially Expressed Genes from RNA-seq data

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DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author
Likun Wang <wanglk@hsc.pku.edu.cn> and Xi Wang <wang-xi05@mails.tsinghua.edu.cn>.
Date of publication
None
Maintainer
Likun Wang <wanglk@hsc.pku.edu.cn>
License
LGPL (>=2)
Version
1.28.0

View on Bioconductor

Files in this package

DEGseq/DESCRIPTION
DEGseq/NAMESPACE
DEGseq/R
DEGseq/R/AllClasses.R
DEGseq/R/AllGenerics.R
DEGseq/R/Bind.R
DEGseq/R/IdentifyDiffExpGenes.R
DEGseq/R/MainFunction.R
DEGseq/R/MainFunction2.R
DEGseq/R/MainFunctionWrap.R
DEGseq/R/NormMethods.R
DEGseq/R/functions.R
DEGseq/R/methodPlots.R
DEGseq/R/samWrapper.R
DEGseq/build
DEGseq/build/vignette.rds
DEGseq/inst
DEGseq/inst/NEWS
DEGseq/inst/doc
DEGseq/inst/doc/DEGseq.R
DEGseq/inst/doc/DEGseq.Rnw
DEGseq/inst/doc/DEGseq.pdf
DEGseq/inst/extdata
DEGseq/inst/extdata/GeneExpExample1000.txt
DEGseq/inst/extdata/GeneExpExample5000.txt
DEGseq/inst/extdata/kidneyChr21.bed.txt
DEGseq/inst/extdata/kidneyChr21Bowtie.txt
DEGseq/inst/extdata/liverChr21.bed.txt
DEGseq/inst/extdata/liverChr21Bowtie.txt
DEGseq/inst/extdata/refFlatChr21.txt
DEGseq/man
DEGseq/man/DEGexp.rd
DEGseq/man/DEGexp2.rd
DEGseq/man/DEGseq.rd
DEGseq/man/GeneExpExample1000.rd
DEGseq/man/GeneExpExample5000.rd
DEGseq/man/getGeneExp.rd
DEGseq/man/kidneyChr21.bed.rd
DEGseq/man/kidneyChr21Bowtie.rd
DEGseq/man/liverChr21.bed.rd
DEGseq/man/liverChr21Bowtie.rd
DEGseq/man/readGeneExp.rd
DEGseq/man/refFlatChr21.rd
DEGseq/man/samWrapper.rd
DEGseq/src
DEGseq/src/getGeneExp.cpp
DEGseq/vignettes
DEGseq/vignettes/DEGseq.Rnw
DEGseq/vignettes/DEGseq.bib