DEGseq: Identify Differentially Expressed Genes from RNA-seq data
Version 1.30.0

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

AuthorLikun Wang <wanglk@hsc.pku.edu.cn> and Xi Wang <wang-xi05@mails.tsinghua.edu.cn>.
Bioconductor views DifferentialExpression GeneExpression Preprocessing RNASeq
Date of publicationNone
MaintainerLikun Wang <wanglk@hsc.pku.edu.cn>
LicenseLGPL (>=2)
Version1.30.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("DEGseq")

Popular man pages

DEGexp2: DEGexp2: Identifying Differentially Expressed Genes from gene...
DEGseq: DEGseq: Identify Differentially Expressed Genes from RNA-seq...
GeneExpExample5000: GeneExpExample5000
kidneyChr21Bowtie: kidneyChr21Bowtie
liverChr21.bed: liverChr21.bed
readGeneExp: readGeneExp: read gene expression values to a matrix
refFlatChr21: refFlatChr21
See all...

All man pages Function index File listing

Man pages

DEGexp: DEGexp: Identifying Differentially Expressed Genes from gene...
DEGexp2: DEGexp2: Identifying Differentially Expressed Genes from gene...
DEGseq: DEGseq: Identify Differentially Expressed Genes from RNA-seq...
GeneExpExample1000: GeneExpExample1000
GeneExpExample5000: GeneExpExample5000
getGeneExp: getGeneExp: Count the number of reads and calculate the RPKM...
kidneyChr21.bed: kidneyChr21.bed
kidneyChr21Bowtie: kidneyChr21Bowtie
liverChr21.bed: liverChr21.bed
liverChr21Bowtie: liverChr21Bowtie
readGeneExp: readGeneExp: read gene expression values to a matrix
refFlatChr21: refFlatChr21
samWrapper: samWrapper: A Wrapper (with some modification) of the...

Functions

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R
R/AllGenerics.R
R/Bind.R
R/IdentifyDiffExpGenes.R
R/MainFunction.R
R/MainFunction2.R
R/MainFunctionWrap.R
R/NormMethods.R
R/functions.R
R/methodPlots.R
R/samWrapper.R
build
build/vignette.rds
inst
inst/NEWS
inst/doc
inst/doc/DEGseq.R
inst/doc/DEGseq.Rnw
inst/doc/DEGseq.pdf
inst/extdata
inst/extdata/GeneExpExample1000.txt
inst/extdata/GeneExpExample5000.txt
inst/extdata/kidneyChr21.bed.txt
inst/extdata/kidneyChr21Bowtie.txt
inst/extdata/liverChr21.bed.txt
inst/extdata/liverChr21Bowtie.txt
inst/extdata/refFlatChr21.txt
man
man/DEGexp.rd
man/DEGexp2.rd
man/DEGseq.rd
man/GeneExpExample1000.rd
man/GeneExpExample5000.rd
man/getGeneExp.rd
man/kidneyChr21.bed.rd
man/kidneyChr21Bowtie.rd
man/liverChr21.bed.rd
man/liverChr21Bowtie.rd
man/readGeneExp.rd
man/refFlatChr21.rd
man/samWrapper.rd
src
src/getGeneExp.cpp
vignettes
vignettes/DEGseq.Rnw
vignettes/DEGseq.bib
DEGseq documentation built on May 20, 2017, 10:41 p.m.

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