spotSegmentation: Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots
Version 1.50.0

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Browse man pages Browse package API and functions Browse package files

AuthorQunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington
Bioconductor views Microarray Preprocessing QualityControl TwoChannel
Date of publicationNone
MaintainerChris Fraley <fraley@stat.washington.edu>
LicenseGPL (>= 2)
Version1.50.0
URL http://www.stat.washington.edu/fraley
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("spotSegmentation")

Man pages

plotBlockImage: Plot Microarray Image Block
plot.spotseg: Microarray Spot Segmentation Plot
spotgrid: Gridding for Blocks of Microarray Spots
spotseg: Microarray Spot Segmentation
spotSegTest: Spot Segmentation Test Data
summary.spotseg: Microarray Spot Segmentation Summary

Functions

plot.spotseg Man page
plotBlockImage Man page Source code
spotSegTest Man page
spotgrid Man page
spotseg Man page
summary.spotseg Man page

Files

DESCRIPTION
NAMESPACE
R
R/plot.spotseg.R
R/plotBlockImage.R
R/spotgrid.R
R/spotseg.R
R/summary.spotseg.R
data
data/spotSegTest.rda
inst
man
man/plot.spotseg.Rd
man/plotBlockImage.Rd
man/spotSegTest.Rd
man/spotgrid.Rd
man/spotseg.Rd
man/summary.spotseg.Rd
vignettes
vignettes/spotsegdoc.pdf
spotSegmentation documentation built on May 20, 2017, 9:25 p.m.