RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

Probabilistic analysis of probe reliability and differential gene expression on short oligonucleotide arrays. Lahti et al. "Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays", TCBB/IEEE, 2011. http://doi.ieeecomputersociety.org/10.1109/TCBB.2009.38

AuthorLeo Lahti <leo.lahti@iki.fi>
Date of publicationNone
MaintainerLeo Lahti <leo.lahti@iki.fi>
LicenseBSD_2_clause + file LICENSE
Version1.30.0
https://github.com/antagomir/RPA

View on Bioconductor

Functions

calculate.rpa Man page
collect.hyperparameters Man page
d.update.fast Man page
estimate.affinities Man page
estimate.hyperparameters Man page
frpa Man page
get.batches Man page
get.probe.matrix Man page
get.probe.parameters Man page
get.probeset Man page
hyperparameter.update Man page
levelmap Man page
n.phylotypes.per.oligo Man page
online.quantile Man page
probe.parameters.tolist Man page
probe.performance Man page
probeplot Man page
probetable Man page
retrieve.probesets Man page
rpa Man page
RPA Man page
rpa.complete Man page
rpa.fit Man page
RPA.iteration Man page
rpa.online Man page
RPA-package Man page
rpaplot Man page
rpa.plot Man page
RPA.preprocess Man page
rpa.summarize Man page
sample.probeset Man page
summarize.batch Man page
summarize.batches Man page
summarize_probedata Man page
summarize.rpa Man page
summarize.sum Man page
updating.hyperparameters Man page

Files

RPA/DESCRIPTION
RPA/LICENSE
RPA/NAMESPACE
RPA/R
RPA/R/AllClasses.R RPA/R/AllGenerics.R RPA/R/RPA-package.R RPA/R/RPA.dcost.R RPA/R/RPA.iteration.R RPA/R/RPA.preprocess.R RPA/R/RPA.tau2.update.R RPA/R/calculate.rpa.hitchip.R RPA/R/d.update.fast.R RPA/R/estimate.affinities.R RPA/R/estimate.hyperparameters.R RPA/R/firstlib.R RPA/R/frpa.R RPA/R/get.probe.matrix.R RPA/R/get.probeset.hitchip.R RPA/R/initialize.priors.R RPA/R/internals.R RPA/R/levelmap.R RPA/R/n.phylotypes.per.oligo.R RPA/R/online.quantile.R RPA/R/plot-methods.R RPA/R/probe.performance.R RPA/R/retrieve.probesets.hitchip.R RPA/R/rpa.R RPA/R/rpa.complete.R RPA/R/rpa.fit.R RPA/R/rpa.online.R RPA/R/rpa.plot.R RPA/R/rpa.summarize.R RPA/R/show-methods.R RPA/R/summarize.batch.R RPA/R/summarize.batches.R RPA/R/summarize.rpa.hitchip.R RPA/R/summarize.sum.hitchip.R RPA/R/summarize_probedata_hitchip.R RPA/R/toydata.R RPA/R/update.hyperparameters.R RPA/R/updating.hyperparameters.R
RPA/README.md
RPA/inst
RPA/inst/CITATION
RPA/inst/NEWS
RPA/inst/doc
RPA/man
RPA/man/RPA-package.Rd RPA/man/RPA.iteration.Rd RPA/man/RPA.preprocess.Rd RPA/man/calculate.rpa.Rd RPA/man/collect.hyperparameters.Rd RPA/man/d.update.fast.Rd RPA/man/estimate.affinities.Rd RPA/man/estimate.hyperparameters.Rd RPA/man/frpa.Rd RPA/man/get.batches.Rd RPA/man/get.probe.matrix.Rd RPA/man/get.probe.parameters.Rd RPA/man/get.probeset.Rd RPA/man/hyperparameter.update.Rd RPA/man/levelmap.Rd RPA/man/n.phylotypes.per.oligo.Rd RPA/man/online.quantile.Rd RPA/man/probe.parameters.tolist.Rd RPA/man/probe.performance.Rd RPA/man/probeplot.Rd RPA/man/probetable.Rd RPA/man/retrieve.probesets.Rd RPA/man/rpa.Rd RPA/man/rpa.complete.Rd RPA/man/rpa.fit.Rd RPA/man/rpa.online.Rd RPA/man/rpa.plot.Rd RPA/man/rpa.summarize.Rd RPA/man/rpaplot.Rd RPA/man/sample.probeset.Rd RPA/man/summarize.batch.Rd RPA/man/summarize.batches.Rd RPA/man/summarize.rpa.Rd RPA/man/summarize.sum.Rd RPA/man/summarize_probedata.Rd RPA/man/updating.hyperparameters.Rd
RPA/tests
RPA/tests/rpa.R
RPA/vignettes
RPA/vignettes/RPA.Rmd
RPA/vignettes/RPA.md

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