RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

Probabilistic analysis of probe reliability and differential gene expression on short oligonucleotide arrays. Lahti et al. "Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays", TCBB/IEEE, 2011. http://doi.ieeecomputersociety.org/10.1109/TCBB.2009.38

AuthorLeo Lahti <leo.lahti@iki.fi>
Date of publicationNone
MaintainerLeo Lahti <leo.lahti@iki.fi>
LicenseBSD_2_clause + file LICENSE
Version1.30.0
https://github.com/antagomir/RPA

View on Bioconductor

Files in this package

RPA/DESCRIPTION
RPA/LICENSE
RPA/NAMESPACE
RPA/R
RPA/R/AllClasses.R RPA/R/AllGenerics.R RPA/R/RPA-package.R RPA/R/RPA.dcost.R RPA/R/RPA.iteration.R RPA/R/RPA.preprocess.R RPA/R/RPA.tau2.update.R RPA/R/calculate.rpa.hitchip.R RPA/R/d.update.fast.R RPA/R/estimate.affinities.R RPA/R/estimate.hyperparameters.R RPA/R/firstlib.R RPA/R/frpa.R RPA/R/get.probe.matrix.R RPA/R/get.probeset.hitchip.R RPA/R/initialize.priors.R RPA/R/internals.R RPA/R/levelmap.R RPA/R/n.phylotypes.per.oligo.R RPA/R/online.quantile.R RPA/R/plot-methods.R RPA/R/probe.performance.R RPA/R/retrieve.probesets.hitchip.R RPA/R/rpa.R RPA/R/rpa.complete.R RPA/R/rpa.fit.R RPA/R/rpa.online.R RPA/R/rpa.plot.R RPA/R/rpa.summarize.R RPA/R/show-methods.R RPA/R/summarize.batch.R RPA/R/summarize.batches.R RPA/R/summarize.rpa.hitchip.R RPA/R/summarize.sum.hitchip.R RPA/R/summarize_probedata_hitchip.R RPA/R/toydata.R RPA/R/update.hyperparameters.R RPA/R/updating.hyperparameters.R
RPA/README.md
RPA/inst
RPA/inst/CITATION
RPA/inst/NEWS
RPA/inst/doc
RPA/man
RPA/man/RPA-package.Rd RPA/man/RPA.iteration.Rd RPA/man/RPA.preprocess.Rd RPA/man/calculate.rpa.Rd RPA/man/collect.hyperparameters.Rd RPA/man/d.update.fast.Rd RPA/man/estimate.affinities.Rd RPA/man/estimate.hyperparameters.Rd RPA/man/frpa.Rd RPA/man/get.batches.Rd RPA/man/get.probe.matrix.Rd RPA/man/get.probe.parameters.Rd RPA/man/get.probeset.Rd RPA/man/hyperparameter.update.Rd RPA/man/levelmap.Rd RPA/man/n.phylotypes.per.oligo.Rd RPA/man/online.quantile.Rd RPA/man/probe.parameters.tolist.Rd RPA/man/probe.performance.Rd RPA/man/probeplot.Rd RPA/man/probetable.Rd RPA/man/retrieve.probesets.Rd RPA/man/rpa.Rd RPA/man/rpa.complete.Rd RPA/man/rpa.fit.Rd RPA/man/rpa.online.Rd RPA/man/rpa.plot.Rd RPA/man/rpa.summarize.Rd RPA/man/rpaplot.Rd RPA/man/sample.probeset.Rd RPA/man/summarize.batch.Rd RPA/man/summarize.batches.Rd RPA/man/summarize.rpa.Rd RPA/man/summarize.sum.Rd RPA/man/summarize_probedata.Rd RPA/man/updating.hyperparameters.Rd
RPA/tests
RPA/tests/rpa.R
RPA/vignettes
RPA/vignettes/RPA.Rmd
RPA/vignettes/RPA.md

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