Description Usage Arguments Details Author(s) References Examples
Computes weighted average over the probes, weighted by their inverse probe-specific variances.
1 | d.update.fast(St, s2)
|
St |
probes x samples data matrix |
s2 |
variances for the probes |
Returns summarized probeset-level weighted average
Leo Lahti leo.lahti@iki.fi
See citation("RPA")
1 | #
|
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
setdiff, sort, table, tapply, union, unique, unsplit, which,
which.max, which.min
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Loading required package: phyloseq
Attaching package: 'phyloseq'
The following object is masked from 'package:affy':
sampleNames
The following object is masked from 'package:Biobase':
sampleNames
RPA Copyright (C) 2008-2016 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under the FreeBSD open source license.
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