updating.hyperparameters: updating hyperparameters

In RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

Description

Hyperparameter update.

Usage

updating.hyperparameters(q, set.inds, verbose, mc.cores = 1, alpha, betas,
  epsilon)

Arguments

q	probes x samples matrix
set.inds	Probe set indices
verbose	Print progress information
mc.cores	Number of cores for parallel computation
alpha	alpha hyperparameter
betas	beta hyperparameters
epsilon	Convergence parameter

Value

List with the following elements: alpha, betas, s2s (variances)

Author(s)

Leo Lahti [e-mail]

References

See citation("RPA")

Examples

# 

Example output

Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colMeans, colSums, colnames, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply,
    setdiff, sort, table, tapply, union, unique, unsplit, which,
    which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: phyloseq

Attaching package: 'phyloseq'

The following object is masked from 'package:affy':

    sampleNames

The following object is masked from 'package:Biobase':

    sampleNames


RPA Copyright (C) 2008-2016 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under the FreeBSD open source license.

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In read.dcf(con) :
  URL 'http://bioconductor.org/BiocInstaller.dcf': status was 'Couldn't resolve host name'

RPA documentation built on Nov. 8, 2020, 7:47 p.m.