Description Usage Arguments Value Author(s) References
Probeset summarization with RPA for taxonomic data.
1 2 | summarize.rpa(taxonomy, level, probedata, verbose = TRUE,
probe.parameters = NULL)
|
taxonomy |
oligo - phylotype matching data.frame |
level |
taxonomic level for the summarization. |
probedata |
preprocessed probes x samples data matrix in absolute domain |
verbose |
print intermediate messages |
probe.parameters |
Optional. If probe.parameters are given, the summarization is based on these and model parameters are not estimated. A list. One element for each probeset with the following probe vectors: affinities, variances |
List with two elements: abundance.table (summarized data matrix in absolute scale) and probe.parameters (RPA probe level parameter estimates)
Contact: Leo Lahti microbiome-admin@googlegroups.com
See citation("microbiome")
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