get.probeset: Get probeset
In RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

Description Usage Arguments Value Author(s) References Examples

Get probeset matrix.

1	get.probeset(name, level, taxonomy, probedata, log10 = TRUE)

`name`	name
`level`	taxonomic level
`taxonomy`	taxonomy
`probedata`	oligos vs. samples preprocessed data matrix; absolute scale
`log10`	Logical. Logarithmize the data TRUE/FALSE

probeset data matrix

Contact: Leo Lahti microbiome-admin@googlegroups.com

See citation('microbiome')

  #taxonomy <- GetPhylogeny('HITChip', 'filtered')
  #data.dir <- system.file("extdata", package = "microbiome")
  #probedata <- read_hitchip(data.dir, "rpa")$probedata
  #ps <- get.probeset('Akkermansia', 'L2', taxonomy, probedata)

RPA documentation built on Nov. 8, 2020, 7:47 p.m.