rpa.plot: rpa.plot
In RPA: RPA: Robust Probabilistic Averaging for probe-level analysis

Description Usage Arguments Details Value Author(s) References Examples

Plot RPA results and probe-level data for a specified probeset.

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rpa.plot(x, set, highlight.probes = NULL, pcol = "darkgrey",
  mucol = "black", ecol = "red", external.signal = NULL, main = NULL,
  plots = "all", ...)

`x`	Output from rpa.complete function
`set`	probeset
`highlight.probes`	mark probes for highlight
`pcol`	probe color
`mucol`	probeset signal color
`ecol`	external signal color
`external.signal`	external signal to be plotted on top
`main`	title
`plots`	plot type
`...`	other arguments to be passed

Plots the preprocessed probe-level observations, estimated probeset-level signal, and probe-specific variances. It is also possible to highlight individual probes and external summary measures.

Used for its side-effects. Returns probes x samples matrix of probe-level data plotted on the image.

Leo Lahti leo.lahti@iki.fi

See citation("RPA")

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Loading required package: Biobase
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RPA Copyright (C) 2008-2016 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under the FreeBSD open source license.

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