sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

This package builds on sangerseqR to allow users to create contigs from collections of Sanger sequencing reads. It provides a wide range of options for a number of commonly-performed actions including read trimming, detecting secondary peaks, and detecting indels using a reference sequence. All parameters can be adjusted interactively either in R or in the associated Shiny applications. There is extensive online documentation, and the package can outputs detailed HTML reports, including chromatograms.

Package details

AuthorRob Lanfear <>, Kuan-Hao Chao <>
Bioconductor views Alignment GUI Genetics Preprocessing QualityControl SangerSeq Sequencing Visualization
MaintainerKuan-Hao Chao <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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sangeranalyseR documentation built on Nov. 8, 2020, 5:59 p.m.