SangerRead-class-MakeBaseCalls: MakeBaseCalls
In sangeranalyseR: sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R
Description
Usage
Arguments
Value
Examples
Description
A SangerRead method which does base calling on SangerRead instance
Usage
1
2
## S4 method for signature 'SangerRead'
MakeBaseCalls(object, signalRatioCutoff = 0.33)
Arguments
object
A SangerRead S4 instance.
signalRatioCutoff
The ratio of the height of a secondary peak to a primary peak. Secondary peaks higher than this ratio are annotated. Those below the ratio are excluded. The default value is 0.33.
Value
A SangerRead instance.
Examples
1
2
data("sangerReadFData")
newSangerReadFData <- MakeBaseCalls(sangerReadFData, signalRatioCutoff = 0.22)
sangeranalyseR documentation built on Nov. 8, 2020, 5:59 p.m.
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Description Usage Arguments Value Examples
Description
A SangerRead method which does base calling on SangerRead instance
Usage
1 2 | ## S4 method for signature 'SangerRead'
MakeBaseCalls(object, signalRatioCutoff = 0.33)
|
Arguments
object |
A SangerRead S4 instance. |
signalRatioCutoff |
The ratio of the height of a secondary peak to a primary peak. Secondary peaks higher than this ratio are annotated. Those below the ratio are excluded. The default value is |
Value
A SangerRead instance.
Examples
1 2 | data("sangerReadFData")
newSangerReadFData <- MakeBaseCalls(sangerReadFData, signalRatioCutoff = 0.22)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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