SangerRead-class-MakeBaseCalls: MakeBaseCalls

Description Usage Arguments Value Examples

Description

A SangerRead method which does base calling on SangerRead instance

Usage

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## S4 method for signature 'SangerRead'
MakeBaseCalls(object, signalRatioCutoff = 0.33)

Arguments

object

A SangerRead S4 instance.

signalRatioCutoff

The ratio of the height of a secondary peak to a primary peak. Secondary peaks higher than this ratio are annotated. Those below the ratio are excluded. The default value is 0.33.

Value

A SangerRead instance.

Examples

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data("sangerReadFData")
newSangerReadFData <- MakeBaseCalls(sangerReadFData, signalRatioCutoff = 0.22)

sangeranalyseR documentation built on Nov. 8, 2020, 5:59 p.m.