srnadiff: Finding differentially expressed unannotated genomic regions from RNA-seq data

srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification.

Getting started

Package details

AuthorZytnicki Matthias [aut, cre], Gonzalez Ignacio [aut]
Bioconductor views Coverage DifferentialExpression Epigenetics GeneExpression ImmunoOncology Preprocessing SmallRNA StatisticalMethod
MaintainerZytnicki Matthias <>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the srnadiff package in your browser

Any scripts or data that you put into this service are public.

srnadiff documentation built on Jan. 7, 2021, 2 a.m.