API for srnadiff
Finding differentially expressed unannotated genomic regions from RNA-seq data

Global functions
IRlist2GR Source code
annotReg Man page
annotReg,srnadiffExp-method Man page
annotReg<- Man page
annotReg<-,srnadiffExp-method Man page
bamFiles Man page
bamFiles,srnadiffExp-method Man page
checkParameters Source code
chromosomeSizes Man page
chromosomeSizes,srnadiffExp-method Man page
computeLogFoldChange Source code
computeNormFactors Source code
computePvalues Source code
countMatrix Man page
countMatrix,srnadiffExp-method Man page
coverages Man page
coverages,srnadiffExp-method Man page
cvgNormalization Source code
hmm Source code
normFactors Man page
normFactors,srnadiffExp-method Man page
normFactors<- Man page
normFactors<-,srnadiffExp,numeric-method Man page
parameters Man page
parameters,srnadiffExp-method Man page
parameters<- Man page
parameters<-,srnadiffExp-method Man page
plotRegions Man page Source code
print.srnadiff_par Man page Source code
rcpp_buildHmm Source code
rcpp_ir Source code
rcpp_normalization Source code
rcpp_viterbi Source code
readAnnotation Man page Source code
reconcileRegions Source code
regions Man page
regions,srnadiffExp-method Man page
removeRedundant Source code
runHmm Source code
runIR Source code
runNaive Source code
sampleInfo Man page
sampleInfo,srnadiffExp-method Man page
show,srnadiffExp-method Man page
srnadiff Man page Source code
srnadiff-package Man page
srnadiffCore Source code
srnadiffDefaultParameters Man page
srnadiffExample Man page Source code
srnadiffExp Man page Source code
srnadiffExp-class Man page
srnadiff documentation built on Oct. 31, 2019, 10:50 a.m.