regions: Extracts differentially expressed regions of an srnadiffExp...
In srnadiff: Finding differentially expressed unannotated genomic regions from RNA-seq data
Description
Usage
Arguments
Value
Examples
Description
This function extracts the differentially expressed regions from
srnadiffExp object ranked by p-value.
Usage
1
2
## S4 method for signature 'srnadiffExp'
regions(object, pvalue = 1)
Arguments
object
An srnadiffExp object.
pvalue
Numeric cutoff value for adjusted p-values. Only regions with
adjusted p-values equal or lower than specified are returned.
Default to 1, all regions are returned.
Value
A GenomicRanges object of the selected differentially
expressed regions.
Examples
1
2
3
srnaExp <- srnadiffExample()
srnaExp <- srnadiff(srnaExp)
regions(srnaExp, pvalue = 0.05)
srnadiff documentation built on Jan. 7, 2021, 2 a.m.
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Description Usage Arguments Value Examples
Description
This function extracts the differentially expressed regions from
srnadiffExp object ranked by p-value.
Usage
1 2 | ## S4 method for signature 'srnadiffExp'
regions(object, pvalue = 1)
|
Arguments
object |
An |
pvalue |
Numeric cutoff value for adjusted p-values. Only regions with adjusted p-values equal or lower than specified are returned. Default to 1, all regions are returned. |
Value
A GenomicRanges object of the selected differentially
expressed regions.
Examples
1 2 3 | srnaExp <- srnadiffExample()
srnaExp <- srnadiff(srnaExp)
regions(srnaExp, pvalue = 0.05)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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