BIMSBbioinfo/netSmooth: Network smoothing for scRNAseq
Version 0.1.1

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

Getting started

Package details

AuthorJonathan Ronen [aut, cre], Altuna Akalin [aut, cre]
Bioconductor views GeneExpression GraphAndNetwork Network RNASeq SingleCell
MaintainerJonathan Ronen <[email protected]>
LicenseArtistic-2.0
Version0.1.1
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("BIMSBbioinfo/netSmooth")
BIMSBbioinfo/netSmooth documentation built on Jan. 11, 2018, 2:25 p.m.