BIMSBbioinfo/netSmooth: Network smoothing for scRNAseq
Version 1.1.0

netSmooth is an R package for network smoothing of single cell RNA sequencing data. Using bio networks such as protein-protein interactions as priors for gene co-expression, netsmooth improves cell type identification from noisy, sparse scRNAseq data.

Getting started

Package details

Bioconductor views Clustering DimensionReduction GeneExpression GraphAndNetwork Network Normalization Preprocessing RNASeq Sequencing SingleCell Transcriptomics
Maintainer
LicenseGPL-3
Version1.1.0
URL https://github.com/BIMSBbioinfo/netSmooth
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("BIMSBbioinfo/netSmooth")
BIMSBbioinfo/netSmooth documentation built on Aug. 6, 2018, 5:33 p.m.