scoreSmoothing: Calculate a score for a smoothing result, for picking the...

Description Usage Arguments Value

View source: R/scoreSmoothing.R

Description

Calculate a score for a smoothing result, for picking the best alpha value

Usage

1
scoreSmoothing(x, method = c("entropy", "robustness"), is.counts = TRUE, ...)

Arguments

x

the network-smoothed expression matrix

method

the scoring method. 'entropy' calculates shannon entropy in a 2D PCA of the data. 'robustness' performs robsut clustering and reports the proportion of samples in robust clusters

Value

the score


BIMSBbioinfo/netSmooth documentation built on Dec. 24, 2019, 8:08 p.m.