Description Usage Arguments Value

View source: R/scoreSmoothing.R

Calculate a score for a smoothing result, for picking the best alpha value

1 | ```
scoreSmoothing(x, method = c("entropy", "robustness"), is.counts = TRUE, ...)
``` |

`x` |
the network-smoothed expression matrix |

`method` |
the scoring method. 'entropy' calculates shannon entropy in a 2D PCA of the data. 'robustness' performs robsut clustering and reports the proportion of samples in robust clusters |

the score

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