projectFromNetworkRecombine-matrix-method: Combine gene expression from smoothed space (that of the...

In BIMSBbioinfo/netSmooth: Network smoothing for scRNAseq

Description

Combine gene expression from smoothed space (that of the network) with the expression of genes that were not smoothed (not present in network)

Usage

## S4 method for signature 'matrix'
projectFromNetworkRecombine(original_expression, smoothed_expression)

Arguments

original_expression	the non-smoothed expression
smoothed_expression	the smoothed gene expression, in the space of the genes defined by the network
filepath	String: Path to location where hdf5 output file is supposed to be saved. Will be ignored when regular matrices or SummarizedExperiment are used as input.

Value

a matrix in the dimensions of original_expression, where values that are present in smoothed_expression are copied from there.

BIMSBbioinfo/netSmooth documentation built on Dec. 24, 2019, 8:08 p.m.