Files in BIMSBbioinfo/netSmooth
Network smoothing for scRNAseq
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/calc2DEntropy.R
R/clusterExperimentWorkflow.R
R/clusterOne.R
R/data.R
R/dimReduce.R
R/l1NormalizeColumns.R
R/l1NormalizeRows.R
R/netSmooth.R
R/pickDimReduction.R
R/projectFromNetworkRecombine.R
R/projectOnNetwork.R
R/randomWalkByIterations.R
R/randomWalkByMatrixInv.R
R/randomWalkBySolve.R
R/robustClusters.R
R/scoreSmoothing.R
R/smoothAndRecombine.R
data-raw/make_ppi_from_string.R
data/human.ppi.rda
data/mouse.ppi.rda
data/smallPPI.rda
data/smallscRNAseq.rda
hex-netsmooth.png
inst/CITATION
inst/data-raw/make_ppi_from_string.R
man/calc2DEntropy.Rd
man/clusterExperimentWorkflow.Rd
man/clusterOne.Rd
man/dimReduce.Rd
man/human.ppi.Rd
man/l1NormalizeColumns.Rd
man/l1NormalizeRows.Rd
man/mouse.ppi.Rd
man/netSmooth.Rd
man/pickDimReduction.Rd
man/projectFromNetworkRecombine-matrix-method.Rd
man/projectOnNetwork.Rd
man/randomWalkByIterations.Rd
man/randomWalkByMatrixInv-matrix-method.Rd
man/randomWalkBySolve-matrix-method.Rd
man/robustClusters.Rd
man/scoreSmoothing.Rd
man/smallPPI.Rd
man/smallscRNAseq.Rd
man/smoothAndRecombine-matrix-method.Rd
netSmooth.Rproj
readme.md
tests/testthat.R
tests/testthat/test_netsmooth.R
tests/testthat/test_recombinations.R
vignettes/bckgrnd.png
vignettes/buildingPPIsFromStringDB.Rmd
vignettes/netSmoothIntro.Rmd
vignettes/netSmoothIntro.html
