rMAT: R implementation from MAT program to normalize and analyze tiling arrays and ChIP-chip data.

This package is an R version of the package MAT and contains functions to parse and merge Affymetrix BPMAP and CEL tiling array files (using C++ based Fusion SDK and Bioconductor package affxparser), normalize tiling arrays using sequence specific models, detect enriched regions from ChIP-chip experiments. Note: users should have GSL and GenomeGraphs installed. Windows users: 'consult the README file available in the inst directory of the source distribution for necessary configuration instructions'. Snow Leopard users can take advantage of increase speed with Grand Central Dispatch!

Package details

AuthorCharles Cheung and Arnaud Droit and Raphael Gottardo
Bioconductor views Microarray Preprocessing
MaintainerArnaud Droit <arnaud.droit@crchuq.ulaval.ca> and Raphael Gottardo <rgottard@fhcrc.org>
URL http://www.rglab.org
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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rMAT documentation built on May 6, 2019, 2:10 a.m.