Files in rMAT

R implementation from MAT program to normalize and analyze tiling arrays and ChIP-chip data.

cleanup

aclocal.m4

configure.ac

DESCRIPTION

.BBSoptions

NAMESPACE

configure

inst/doc/rMAT.pdf inst/doc/rMAT.R

inst/doc/rMAT.Rnw

inst/extdata/Swr1WTIP_Short.CEL

inst/extdata/Sc03b_MR_v04_10000.bpmap

vignettes/README

vignettes/MyBedFile.bed

vignettes/rMAT.Rnw

scripts/Viewport.R scripts/test.R R/MATScore.R R/ReadBPMAPHeader.R R/SetMethods.R R/BPMAPCelMerger.R R/ReadBPMAPSeq.R R/ReadBPMAPAllSeqHeader.R R/NormalizeProbes.R R/SetClasses.R R/BPMAPCelParser.R

src/Rdefines.h

src/affy-base-types.h

src/DeclareAll.c

src/FileWriter.h

src/FileIO.cpp

src/Makevars.win

src/BARFileWriter.h

src/BARWriter.cpp

src/TagValuePair.h

src/BPMAPFileData.cpp

src/config.h.in

src/FileIO.h

src/BARFileData.cpp

src/NormalizeProbes.c

src/Makevars.in

src/BPMAPfunctions.cpp

src/BARFileWriter.cpp

src/BARFileData.h

src/BPMAPFileData.h

src/FileWriter.cpp

src/BARReader.cpp

man/MATScore.Rd man/BPMAPCelParser.Rd man/callEnrichedRegions.Rd man/summary.Rd man/tillingSet.Rd man/ReadBPMAPAllSeqHeader.Rd man/show.Rd man/computeMATScore.Rd man/NormalizeProbes.Rd

build/vignette.rds

rMAT documentation built on May 6, 2019, 2:10 a.m.