Files in rMAT
R implementation from MAT program to normalize and analyze tiling arrays and ChIP-chip data.

configure.ac
cleanup
DESCRIPTION
.BBSoptions
configure
aclocal.m4
NAMESPACE
vignettes/rMAT.Rnw
vignettes/README
vignettes/MyBedFile.bed
src/FileWriter.h
src/config.h.in
src/TagValuePair.h
src/BARFileWriter.cpp
src/affy-base-types.h
src/NormalizeProbes.c
src/BPMAPFileData.cpp
src/FileWriter.cpp
src/BARFileData.h
src/BARWriter.cpp
src/BARFileWriter.h
src/Makevars.in
src/FileIO.cpp
src/BPMAPFileData.h
src/Rdefines.h
src/BARReader.cpp
src/BPMAPfunctions.cpp
src/Makevars.win
src/DeclareAll.c
src/BARFileData.cpp
src/FileIO.h
scripts/Viewport.R scripts/test.R
build/vignette.rds
R/MATScore.R R/NormalizeProbes.R R/SetMethods.R R/SetClasses.R R/BPMAPCelMerger.R R/ReadBPMAPHeader.R R/ReadBPMAPAllSeqHeader.R R/ReadBPMAPSeq.R R/BPMAPCelParser.R inst/doc/rMAT.R inst/doc/rMAT.pdf
inst/doc/rMAT.Rnw
inst/extdata/Swr1WTIP_Short.CEL
inst/extdata/Sc03b_MR_v04_10000.bpmap
man/computeMATScore.Rd man/summary.Rd man/callEnrichedRegions.Rd man/show.Rd man/BPMAPCelParser.Rd man/ReadBPMAPAllSeqHeader.Rd man/MATScore.Rd man/tillingSet.Rd man/NormalizeProbes.Rd
rMAT documentation built on Nov. 17, 2017, 10:57 a.m.