R/ReadBPMAPAllSeqHeader.R

In rMAT: R implementation from MAT program to normalize and analyze tiling arrays and ChIP-chip data.

ReadBPMAPAllSeqHeader<-function(fileName)
{
  #borrow from affxparser
  # Expand '~' pathnames to full pathnames.
  fileName <- file.path(dirname(fileName), basename(fileName));
  if (!file.exists(fileName))
  {
    stop("Cannot read BPMAP file. File not found: ", fileName);
  }
  content<-.Call("readBPMAPAllSeqHeader", fileName, package="rMAT")
  content
}